N4-Acetylcytidine enhances synthetic mRNA translation yield and fidelity

N4-Ацетилцитидин повышает выход и точность трансляции синтетической мРНК
Bin Wu, Þorkell Andrésson, Shalini Oberdoerffer, Ayush T. Raman, Hai‐Quan Mao, Sarah Schiffers, B.Dean Nelson, Maria Prigge, Shriya Krishna, Leslie Watkins, Yining Zhu, Nishu Tyagi, Hamid Beiki, Sudipto Das, J J
2026-07-01

N1-methylpseudouridine (m1Ψ)N4-acetylcytidine (ac4C)ribosomal frameshiftingsynthetic mRNA therapeuticstranslation elongation rate
Abstract Synthetic mRNA therapeutics offer a versatile platform for treating diverse conditions, including cancer and infectious diseases. For delivery into cells, these mRNAs are encapsulated in lipid nanoparticles and commonly incorporate modified ribonucleotides to improve stability, enhance translation and mitigate immune recognition 1 . N 1 -Methylpseudouridine (m 1 Ψ) has become the industry standard for synthetic mRNAs owing to its effectiveness in promoting translation and reducing immunogenicity 2 . However, recent studies have shown that m 1 Ψ can compromise translational fidelity, leading to errors such as premature termination and ribosomal frameshifting 3–5 . Here we reveal N 4 -acetylcytidine (ac 4 C) as a functionally distinct alternative to m 1 Ψ. Across cultured cell lines, primary human monocyte-derived dendritic cells and mouse liver, ac 4 C suppressed inflammatory responses as effectively as m 1 Ψ while driving higher protein yields. Single-molecule imaging of translation revealed broadly similar ribosome densities per mRNA for ac 4 C-modified and m 1 Ψ-modified transcripts. However, translation elongation with m 1 Ψ-modified mRNA was nearly twofold slower than with ac 4 C, which resulted in reduced protein output and increased ribosome collisions that further limited protein production through the engagement of quality-control pathways and +1 frameshifting. These findings underscore the importance of context in designing therapeutic mRNAs and position the translation elongation rate as a key determinant of the efficacy of modified ribonucleotides.
1
N4-acetylcytidine (ac4C) is a functionally distinct alternative to N1-methylpseudouridine (m1Ψ) for synthetic mRNAs.
2
Single-molecule imaging shows similar ribosome densities per mRNA for ac4C- and m1Ψ-modified transcripts.
3
Slower elongation on m1Ψ increases ribosome collisions, engages quality-control pathways, and promotes +1 frameshifting, limiting protein production.
4
Translation elongation on m1Ψ-modified mRNA is nearly twofold slower than on ac4C-modified mRNA, reducing protein output.
5
Translation elongation rate is a key determinant of the efficacy of modified ribonucleotides in therapeutic mRNA design.
6
ac4C suppresses inflammatory responses in cultured cell lines, primary human monocyte-derived dendritic cells, and mouse liver as effectively as m1Ψ.
7
ac4C-modified mRNAs drive higher protein yields than m1Ψ-modified mRNAs across tested systems.

Synthetic mRNA therapeutics modified with N4-acetylcytidine (ac4C) or N1-methylpseudouridine (m1Ψ)

Effect of ac4C versus m1Ψ modifications on translation yield and fidelity, including translation elongation rate, ribosome density/collisions, induction of quality-control pathways, frameshifting, protein output, and immunogenicity/inflammatory responses

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Publication Date
2026-07-01
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Authors
Bin Wu
Þorkell Andrésson
Shalini Oberdoerffer
Ayush T. Raman
Hai‐Quan Mao
Sarah Schiffers
B.Dean Nelson
Maria Prigge
Shriya Krishna
Leslie Watkins
Yining Zhu
Nishu Tyagi
Hamid Beiki
Sudipto Das
J J
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