MISA-web: a web server for microsatellite prediction
MISA-web: веб-сервер для предсказания микросателлитов
2017-04-06
SCID: 54.1/4ak86n6e
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GFF3 formatMISA-webcompound microsatellite detectionmicrosatellite markersmicrosatellite prediction
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Abstract (AI)
MOTIVATION: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. RESULTS: We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. AVAILABILITY AND IMPLEMENTATION: MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code. CONTACT: scholz@ipk-gatersleben.de.
Key Findings
1
MISA was extended and reimplemented as a web-based application for developing microsatellite markers from resequencing data.
2
MISA-web improves detection of compound microsatellites compared with the original MISA functionality.
3
MISA-web is publicly accessible online and provides tutorials, usage documentation, and source-code downloads.
4
The web server supports displaying and exporting microsatellite results in GFF3 format for downstream analyses.
Research Object
MISA-web, a web-based application for microsatellite prediction from resequencing data
Research Subject
The detection and characterization of microsatellites, including improved compound microsatellite detection and GFF3 result export
Publication Details
Publication Date
2017-04-06
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