Autonomous biomedical research with an artificial intelligence agent
Автономное биомедицинское исследование с использованием агента искусственного интеллекта
2026-07-09
SCID: 54.1/4akudeh7
Discuss with AI
Biomniagentic environmentbiomedical artificial intelligence agentdrug repurposingretrieval-augmented planning
Figures from the paper
Abstract (AI)
Biomedical research is increasingly constrained by repetitive, fragmented workflows that slow discovery. We introduce Biomni, a general-purpose biomedical artificial intelligence agent that autonomously executes diverse research tasks. To map the biomedical action space, Biomni's action-discovery agent mines tools, databases, and protocols from thousands of publications across 25 domains, building a unified agentic environment. Its general-purpose architecture integrates large language model reasoning with retrieval-augmented planning and code-based execution, dynamically composing workflows without predefined templates. Systematic benchmarking shows strong generalization across heterogeneous tasks-causal gene prioritization, drug repurposing, rare-disease diagnosis, microbiome analysis, and molecular cloning-without task-specific tuning. Real-world case studies demonstrate Biomni interpreting multimodal datasets, optimizing protein stability, orchestrating wet-lab instruments, and generating experimentally testable protocols. Biomni envisions artificial intelligence augmenting human scientists and accelerating discovery.
Key Findings
1
An action-discovery agent mines tools, databases, and protocols from thousands of publications to construct a unified biomedical agentic environment.
2
Benchmarking indicates strong generalization across causal gene prioritization, drug repurposing, rare-disease diagnosis, microbiome analysis, and molecular cloning without task-specific tuning.
3
Biomni combines large-language-model reasoning, retrieval-augmented planning, and code execution to dynamically compose workflows without predefined templates.
4
Biomni is a general-purpose biomedical AI agent that autonomously executes diverse research tasks across 25 biomedical domains.
5
Case studies show Biomni can interpret multimodal datasets, optimize protein stability, coordinate wet-lab instruments, and generate experimentally testable protocols.
Research Object
Biomni, a general-purpose biomedical artificial intelligence agent
Research Subject
autonomous execution and generalization of diverse biomedical research tasks through dynamically composed workflows
Publication Details
Publication Date
2026-07-09
Journal
Publisher
ISSN
Cited by
33
Access Type
Author Information
Download PDF
Subscribe to digest
References available in scid.ai18
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq22014
Highly accurate protein structure prediction with AlphaFold2021
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability2013
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data2009
limma powers differential expression analyses for RNA-sequencing and microarray studies2015
SciPy 1.0: fundamental algorithms for scientific computing in Python2020
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters2012
WGCNA: an R package for weighted correlation network analysis2008
Array programming with NumPy2020
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest2022
Stan : A Probabilistic Programming Language2017
Statsmodels: Econometric and Statistical Modeling with Python2010
The GTEx Consortium atlas of genetic regulatory effects across human tissues2020
OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders2014
Multimodal biomedical AI2022
Self-Driving Laboratories for Chemistry and Materials Science2024
Accelerating scientific discovery with Co-Scientist2026
SpatialAgent: An autonomous AI agent for spatial biology2025