QCTFF : On the construction of a novel protein force field
QCTFF: о создании нового силового поля для белков
2015-03-13
SCID: 54.1/4bhrw6vz
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QCTFF protein force fieldQuantum Chemical Topologyatomistic protein modelingkriging machine learningmultipolar Coulomb expansion
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Abstract (AI)
In this perspective, we explain the strategy behind QCTFF, the current name for a novel atomistic protein force field. The atoms are constructed using Quantum Chemical Topology (QCT). These topological atoms determine how a system's energy is partitioned. We give a brief account of the results hitherto obtained, and a glimpse of unpublished results. Combining this QCT partitioning with the universal quantum expression of energy, leads to four types of fundamental energy contributions. The first of these is intra‐atomic and the remaining three interatomic: (i) atomic self‐energy, (ii) Coulomb energy, (iii) exchange energy, and (iv) correlation energy. All structural and dynamic effects emerge from the interplay of these contributions. The machine learning method kriging captures well how they change in response to a change in nuclear configuration. Second, the Coulomb energy is represented by a converging multipolar series expansion when the nuclei are sufficiently far apart. © 2015 The Authors International Journal of Quantum Chemistry Published by Wiley Periodicals, Inc.
Key Findings
1
At sufficiently large nuclear separations, QCTFF represents Coulomb energy using a converging multipolar series expansion.
2
Kriging machine learning effectively captures changes in the energy contributions caused by variations in nuclear configuration.
3
Protein structural and dynamical effects are described as emerging from the interplay among these four energy contributions.
4
QCTFF constructs atomistic protein force fields using Quantum Chemical Topology, whose topological atoms define the system’s energy partitioning.
5
The QCT partitioning and universal quantum energy expression yield four fundamental contributions: atomic self-energy, Coulomb, exchange, and correlation energies.
Research Object
QCTFF novel atomistic protein force field
Research Subject
the construction and energy-partitioning framework of QCTFF, including its fundamental intra-atomic and interatomic energy contributions and their dependence on nuclear configuration
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2015-03-13
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