ADMET-AI: a machine learning ADMET platform for evaluation of large-scale chemical libraries

ADMET-AI: платформа машинного обучения для оценки крупномасштабных библиотек химических соединений по ADMET
James Zou, Joseph C. Wu, Kyle Swanson, Jeremy Leitz, Parker Walther, Souhrid Mukherjee, Rabindra V. Shivnaraine
2024-06-21

ADMET predictionTDC ADMET Leaderboardhigh-throughput ADMET screeningmachine learning platform
MOTIVATION: The emergence of large chemical repositories and combinatorial chemical spaces, coupled with high-throughput docking and generative AI, have greatly expanded the chemical diversity of small molecules for drug discovery. Selecting compounds for experimental validation requires filtering these molecules based on favourable druglike properties, such as Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET). RESULTS: We developed ADMET-AI, a machine learning platform that provides fast and accurate ADMET predictions both as a website and as a Python package. ADMET-AI has the highest average rank on the TDC ADMET Leaderboard, and it is currently the fastest web-based ADMET predictor, with a 45% reduction in time compared to the next fastest public ADMET web server. ADMET-AI can also be run locally with predictions for one million molecules taking just 3.1 h. AVAILABILITY AND IMPLEMENTATION: The ADMET-AI platform is freely available both as a web server at admet.ai.greenstonebio.com and as an open-source Python package for local batch prediction at github.com/swansonk14/admet_ai (also archived on Zenodo at doi.org/10.5281/zenodo.10372930). All data and models are archived on Zenodo at doi.org/10.5281/zenodo.10372418.
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ADMET-AI achieved the highest average rank on the Therapeutics Data Commons (TDC) ADMET Leaderboard.
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ADMET-AI is a machine learning platform providing fast and accurate ADMET predictions accessible as a website and Python package.
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ADMET-AI supports local batch prediction at scale: predicting ADMET properties for one million molecules in approximately 3.1 hours.
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All ADMET-AI data, models, and code are publicly available (web server and open-source Python package with Zenodo archives).
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The ADMET-AI web server is the fastest public web-based ADMET predictor, reducing prediction time by 45% versus the next fastest public ADMET web server.

ADMET-AI machine learning platform for predicting ADMET properties of large-scale chemical libraries

Fast and accurate prediction and evaluation of ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) properties for large chemical repositories and combinatorial libraries, including performance (speed, rank) and scalability to batch predictions

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Publication Date
2024-06-21
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Authors
James Zou
Joseph C. Wu
Kyle Swanson
Jeremy Leitz
Parker Walther
Souhrid Mukherjee
Rabindra V. Shivnaraine
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