SNP rs657152 Is Not Associated with the Level of Viral Load in COVID-19 or the Probability of Disease in the Population of Caucasians in Eastern Siberia

SNP rs657152 не связан с уровнем вирусной нагрузки при COVID-19 или вероятностью заболевания в популяции европеоидов Восточной Сибири
Е. А. Орлова, О. Б. Огарков, П. А. Хромова, V. V. Sinkov, М. А. Хаснатинов, С. Н. Жданова, Л. В. Рычкова, Л. И. Колесникова
2021-08-01

COVID-19Caucasian populationSNP rs657152TaqMan PCRviral load
Cross-replicating associations with rs657152 at the 9q34.2c locus and rs11385942 at the 3p21.31 locus found in patients with severe COVID-19 in the Caucasian population require the study of the discovered phenomenon in various populations, including as an independent biological marker. Primers and TaqMan probes for PCR discrimination of the A and C alleles in single nucleotide polymorphism (SNP) rs657152 have been developed. The polymorphism of the rs657152 A/C locus was determined in 129 patients with COVID-19 and in a control group of 466 healthy individuals. There were no significant differences in the frequency of distribution of the A and C alleles, 0.47/0.53 and 0.45/0.55, between patients and healthy subjects, respectively. Also, no differences were found in the distribution of alleles in patients with a high viral load in the smear (Ct in the range of 16-25) in comparison with an average and low viral load (Ct in the range of 26-40).
1
Among Eastern Siberian Caucasians, rs657152 allele frequencies were similar in COVID-19 patients and healthy controls: 0.47/0.53 versus 0.45/0.55.
2
No significant association was found between rs657152 genotype or allele distribution and the probability of having COVID-19.
3
PCR primers and TaqMan probes were developed to discriminate A and C alleles at SNP rs657152.
4
rs657152 allele distribution did not differ between patients with high viral load (Ct 16–25) and those with average or low viral load (Ct 26–40).

SNP rs657152 A/C polymorphism in Caucasian COVID-19 patients and healthy individuals from Eastern Siberia

The associations of rs657152 genotype/allele distribution with COVID-19 disease status and viral-load level

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2021-08-01
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Е. А. Орлова
О. Б. Огарков
П. А. Хромова
V. V. Sinkov
М. А. Хаснатинов
С. Н. Жданова
Л. В. Рычкова
Л. И. Колесникова
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