Machine Learning model interpretability using SHAP values: Application to Igneous Rock Classification task

Интерпретируемость моделей машинного обучения с использованием значений SHAP: применение к задаче классификации магматических пород
Lucía Asiain, Gabriela Ferracutti, Antonella S. Antonini, Juan Tanzola, Silvia Mabel Castro, Ernesto Bjerg, María Luján Ganuza
2024-07-22

El Fierro intrusive bodySHAP valuesgeochemical parametersigneous rock classificationrandom forest classification
El Fierro intrusive body is one of the bodies that compose the La Jovita–Las Aguilas mafic–ultramafic belt, located in the Sierra Grande de San Luis, Argentina. The units of this belt carry a base metal sulfide (BMS) mineralization and platinum group minerals (PGM). The macroscopic description of mafic and ultramafic rocks, as is usually done by the mining exploration companies, leads to an imprecise modal classification of the rocks. In this study, we develop a random forest-based prediction model, which uses geochemical parameters to classify mafic and ultramafic rocks intercepted by drill cores. This model showed an accuracy of between 86% and 94%, and an f1_score of 96%. Random forest classification is a widely adopted Machine Learning approach to construct predictive models across various research domains. However, as models become more complex, their interpretation can be considerably difficult. To interpret the model results, we use both global and local perspectives, incorporating the SHAP (SHapley Additive exPlanations) method. The SHAP technique allows us to analyze individual samples using force plots, and provides a measure of the importance of each geochemical input attribute in the model output. As a result of analyzing the contribution of each input feature to the model, the three variables with the highest contributions were identified in the following order: Al2O3, MgO, and Sr.
1
A random forest model classifies mafic and ultramafic rocks from drill-core geochemical parameters with 86–94% accuracy and an F1 score of 96%.
2
Al2O3, MgO, and Sr are the three geochemical variables contributing most strongly to model predictions, in that order.
3
SHAP analysis provides global feature importance and local, sample-level explanations through force plots.
4
The model addresses imprecise modal classification resulting from macroscopic descriptions commonly used in mining exploration.

Mafic and ultramafic rocks from the El Fierro intrusive body intercepted by drill cores

Geochemical-parameter-based classification of the rocks and interpretability of the random forest model, including the contributions and importance of input features identified using SHAP

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2024-07-22
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Authors
Lucía Asiain
Gabriela Ferracutti
Antonella S. Antonini
Juan Tanzola
Silvia Mabel Castro
Ernesto Bjerg
María Luján Ganuza
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