AI agents in drug discovery: applications and case studies

ИИ-агенты в разработке лекарственных препаратов: применения и практические примеры
Dinh Long Huynh, Srijit Seal, M. Chelbi, Arijit Patra, Sara Khosravi, Ankur Kumar, Mattson Thieme, Isaac Wilks, Mark Davies, Filippo Abbondanza, Jessica Mustali, Yannick Sun, Nick Edwards, Julie Penzotti, Daniil Boiko, Andrei Tyrin, Douglas W. Selinger, Ayaan Parikh, Rahul Vijayan, Shoman Kasbekar, Dylan Reid, Anne E. Carpenter, Andreas Bender, Ola Spjuth
2026-03-24

agentic AIdrug discoverydrug repurposinglarge language modelsself-driving labs
• Agentic AI autonomously executes drug discovery workflows by combining language models with specialized tools for perception, computation, action and memory. • Real-world implementations achieve speed improvements, compressing literature analysis from weeks to minutes and assay development from months to hours. • Future integration enables self-driving labs and digital twins, shifting human focus from routine tasks to strategic decisions with appropriate governance frameworks. AI agents are emerging as transformative tools in drug discovery, with the ability to autonomously reason, act and learn through complicated research workflows. Building on large language models and specialized tools, these systems can integrate biomedical data, execute tasks, conduct experiments and iteratively refine hypotheses. We provide a conceptual overview of agentic AI architectures and illustrate their applications across key stages of drug discovery, including literature synthesis, automated protocol generation, toxicity prediction, small-molecule synthesis, drug repurposing and end-to-end decision-making. Early implementations demonstrate substantial gains in speed, reproducibility and scalability. We discuss the challenges related to data heterogeneity, system reliability, privacy, benchmarking and outline future directions toward technology in support of science and translation.
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Agentic AI combines language models with specialized perception, computation, action, and memory tools to autonomously execute complex drug discovery workflows.
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Agentic systems can integrate biomedical data, conduct experiments, and iteratively refine hypotheses, supporting more autonomous research workflows.
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Applications span literature synthesis, automated protocol generation, toxicity prediction, small-molecule synthesis, drug repurposing, and end-to-end decision-making.
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Major challenges include heterogeneous data, system reliability, privacy, benchmarking, and governance; future systems may enable self-driving laboratories and digital twins.
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Real-world implementations compress literature analysis from weeks to minutes and assay development from months to hours, while improving reproducibility and scalability.

agentic AI systems applied to drug discovery workflows

their autonomous reasoning, action, learning, and performance across drug discovery stages, including speed, reproducibility, scalability, and reliability

Publication Details
Publication Date
2026-03-24
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Authors
Dinh Long Huynh
Srijit Seal
M. Chelbi
Arijit Patra
Sara Khosravi
Ankur Kumar
Mattson Thieme
Isaac Wilks
Mark Davies
Filippo Abbondanza
Jessica Mustali
Yannick Sun
Nick Edwards
Julie Penzotti
Daniil Boiko
Andrei Tyrin
Douglas W. Selinger
Ayaan Parikh
Rahul Vijayan
Shoman Kasbekar
Dylan Reid
Anne E. Carpenter
Andreas Bender
Ola Spjuth
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