Bioconductor: open software development for computational biology and bioinformatics

Bioconductor: открытая разработка программного обеспечения для вычислительной биологии и биоинформатики
Jianhua Zhang, Rafael A. Irizarry, Jeff Gentry, Sandrine Dudoit, Jean Yang, Douglas M. Bates, Kurt Hornik, Cheng Li, Gordon K. Smyth, Wolfgang Huber, Colin A. Smith, Vincent J. Carey, Robert Gentleman, Ben Bolstad, Marcel Dettling, Byron Ellis, Laurent Gautier, Yongchao Ge, Torsten Hothorn, Stefano M. Iacus, Friedrich Leisch, Martin Maechler, Anthony Rossini, Günther Sawitzki, Luke Tierney
2004-09-15

Bioconductorbioinformaticscomputational biologyopen software developmentreproducible research
The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples.
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A central goal is enabling remote reproducibility of computational biology research results.
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Bioconductor is a collaborative initiative for developing extensible software in computational biology and bioinformatics.
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Bioconductor seeks to lower barriers to interdisciplinary scientific research by providing accessible computational tools.
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The paper describes Bioconductor’s methods, challenges, comparisons with other open bioinformatics projects, and working examples.
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The project aims to promote innovative software development and widespread use through open, collaborative practices.

The Bioconductor software project (extensible open-source software for computational biology and bioinformatics)

open, collaborative development and use of extensible software for computational biology and bioinformatics, including reproducible research

Publication Details
Publication Date
2004-09-15
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Authors
Jianhua Zhang
Rafael A. Irizarry
Jeff Gentry
Sandrine Dudoit
Jean Yang
Douglas M. Bates
Kurt Hornik
Cheng Li
Gordon K. Smyth
Wolfgang Huber
Colin A. Smith
Vincent J. Carey
Robert Gentleman
Ben Bolstad
Marcel Dettling
Byron Ellis
Laurent Gautier
Yongchao Ge
Torsten Hothorn
Stefano M. Iacus
Friedrich Leisch
Martin Maechler
Anthony Rossini
Günther Sawitzki
Luke Tierney
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