The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits

Jorge Ferrer, Mitchell A. Lazar, Gonçalo R. Abecasis, Dylan Spalding, Paul Flicek, Krister Bokvist, Kyle J. Gaulton, Nancy J. Cox, Michael Boehnke, Josée Dupuis, David Altshuler, José C. Florez, Thomas Keane, Melina Claussnitzer, Richard N. Bergman, Ying Sun, Anna L. Gloyn, Kasper Lage, Robert L. Hanson, Daniel Taliun, Ryan Welch, Josep M. Mercader, Hae Kyung Im, John C. Chambers, J Engreitz, John Blangero, Donald W. Bowden, Ravindranath Duggirala, Leslie A. Lange, Yii‐Der Ida Chen, Trang Thi Huyen Nguyen, Patrick Smadbeck, Dongkeun Jang, Kelly A. Frazer, Erwin Böttinger, Timothy M. Frayling, Andrew T. Hattersley, Fredrik Karpe, Aoife McMahon, Marcel den Hoed, Sebanti Sengupta, Christopher D. Brown, Inês Cebola, Todd J. Green, Craig L. Hanis, Petra J. M. Elders, Donna M. Lehman, Lizz Caulkins, Peter Dornbos, Ryan Koesterer, Marcin von Grotthuss, Joline W. J. Beulens, Audrey Y. Chu, Suzanne B.R. Jacobs, Jennifer E. Below, Eric B. Fauman, Seung K. Kim, Oliver Ruebenacker, Matthew Flickinger, Jason Flannick, Noël P. Burtt, Christopher Clark, Parul Kudtarkar, Maria C. Costanzo, Jeffrey Massung, Clint Gilbert, Quy Hoang, Andrew P. Boughton, Preeti Singh, Marc Duby, Annie Moriondo, Benjamin Alexander, MacKenzie Brandes, Mary Carmichael, Kenneth C. Huellas-Bruskiewicz, Yue Ji, Alexandria Kluge, Beena Akolkar, Nicholette D. Allred, M. Julia Brosnan, Kenneth Bruskiewicz, Andriy Cherkas, Duc Dong, Caroline S. Fox, Quy Hoang, Sidra Iqbal, Tad Jordan, Tania N. Kamphaus, Alexandria Kluge
2023-03-23

SCID:  54.1/z8zmy5yp
Associations between human genetic variation and clinical phenotypes have become a foundation of biomedical research. Most repositories of these data seek to be disease-agnostic and therefore lack disease-focused views. The Type 2 Diabetes Knowledge Portal (T2DKP) is a public resource of genetic datasets and genomic annotations dedicated to type 2 diabetes (T2D) and related traits. Here, we seek to make the T2DKP more accessible to prospective users and more useful to existing users. First, we evaluate the T2DKP's comprehensiveness by comparing its datasets with those of other repositories. Second, we describe how researchers unfamiliar with human genetic data can begin using and correctly interpreting them via the T2DKP. Third, we describe how existing users can extend their current workflows to use the full suite of tools offered by the T2DKP. We finally discuss the lessons offered by the T2DKP toward the goal of democratizing access to complex disease genetic results.
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Publication Date
2023-03-23
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Authors
Jorge Ferrer
Mitchell A. Lazar
Gonçalo R. Abecasis
Dylan Spalding
Paul Flicek
Krister Bokvist
Kyle J. Gaulton
Nancy J. Cox
Michael Boehnke
Josée Dupuis
David Altshuler
José C. Florez
Thomas Keane
Melina Claussnitzer
Richard N. Bergman
Ying Sun
Anna L. Gloyn
Kasper Lage
Robert L. Hanson
Daniel Taliun
Ryan Welch
Josep M. Mercader
Hae Kyung Im
John C. Chambers
J Engreitz
John Blangero
Donald W. Bowden
Ravindranath Duggirala
Leslie A. Lange
Yii‐Der Ida Chen
Trang Thi Huyen Nguyen
Patrick Smadbeck
Dongkeun Jang
Kelly A. Frazer
Erwin Böttinger
Timothy M. Frayling
Andrew T. Hattersley
Fredrik Karpe
Aoife McMahon
Marcel den Hoed
Sebanti Sengupta
Christopher D. Brown
Inês Cebola
Todd J. Green
Craig L. Hanis
Petra J. M. Elders
Donna M. Lehman
Lizz Caulkins
Peter Dornbos
Ryan Koesterer
Marcin von Grotthuss
Joline W. J. Beulens
Audrey Y. Chu
Suzanne B.R. Jacobs
Jennifer E. Below
Eric B. Fauman
Seung K. Kim
Oliver Ruebenacker
Matthew Flickinger
Jason Flannick
Noël P. Burtt
Christopher Clark
Parul Kudtarkar
Maria C. Costanzo
Jeffrey Massung
Clint Gilbert
Quy Hoang
Andrew P. Boughton
Preeti Singh
Marc Duby
Annie Moriondo
Benjamin Alexander
MacKenzie Brandes
Mary Carmichael
Kenneth C. Huellas-Bruskiewicz
Yue Ji
Alexandria Kluge
Beena Akolkar
Nicholette D. Allred
M. Julia Brosnan
Kenneth Bruskiewicz
Andriy Cherkas
Duc Dong
Caroline S. Fox
Quy Hoang
Sidra Iqbal
Tad Jordan
Tania N. Kamphaus
Alexandria Kluge
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