Machine Learning Approaches to TCR Repertoire Analysis

Подходы машинного обучения к анализу репертуара TCR
Yotaro Katayama, Ryo Yokota, Taishin Akiyama, Tetsuya Kobayashi
2022-07-15

T cell receptorsTCR repertoire analysisdeep learningimmunological data analysismachine learning
Sparked by the development of genome sequencing technology, the quantity and quality of data handled in immunological research have been changing dramatically. Various data and database platforms are now driving the rapid progress of machine learning for immunological data analysis. Of various topics in immunology, T cell receptor repertoire analysis is one of the most important targets of machine learning for assessing the state and abnormalities of immune systems. In this paper, we review recent repertoire analysis methods based on machine learning and deep learning and discuss their prospects.
1
Advances in genome sequencing have dramatically increased the quantity and quality of immunological data available for analysis.
2
Data and database platforms are accelerating the application of machine learning to immunological research.
3
T-cell receptor repertoire analysis is identified as a major machine-learning target for assessing immune-system states and abnormalities.
4
The paper reviews recent machine-learning and deep-learning methods for T-cell receptor repertoire analysis and discusses future prospects.

T cell receptor repertoires

Machine-learning and deep-learning analysis methods for assessing immune-system state and abnormalities from TCR repertoire data

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2022-07-15
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Authors
Yotaro Katayama
Ryo Yokota
Taishin Akiyama
Tetsuya Kobayashi
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