SoilGrids250m: Global gridded soil information based on machine learning

SoilGrids250m: Глобальная растровая почвенная информация на основе машинного обучения
Tomislav Hengl, Marvin N. Wright, G.B.M. Heuvelink, Rodrigo Vargas, N.H. Batjes, Bas Kempen, Eloi Ribeiro, J.G.B. Leenaars, Ichsani Wheeler, Milan Kilibarda, R.A. MacMillan, Jorge Mendes de Jesus, M. Ruiperez González, Aleksandar Blagotić, Wei Shangguan, Xiaoyuan Geng, Bernhard Bauer-Marschallinger, Mário Guevara, S. Mantel
2017-02-16

10-fold cross-validationR packages: ranger, xgboost, nnet, caretSoilGrids250mdepth to bedrock and soil class maps (WRB, USDA)global gridded soil informationmachine learning ensemble (random forest, gradient boosting, multinomial logistic regression)remote sensing-based covariates (MODIS, SRTM DEM, climatic, landform, lithology)soil profile training data (~150,000)soil properties (organic carbon, bulk density, CEC, pH, soil texture, coarse fragments)spatial resolution 250 m
This paper describes the technical development and accuracy assessment of the most recent and improved version of the SoilGrids system at 250m resolution (June 2016 update). SoilGrids provides global predictions for standard numeric soil properties (organic carbon, bulk density, Cation Exchange Capacity (CEC), pH, soil texture fractions and coarse fragments) at seven standard depths (0, 5, 15, 30, 60, 100 and 200 cm), in addition to predictions of depth to bedrock and distribution of soil classes based on the World Reference Base (WRB) and USDA classification systems (ca. 280 raster layers in total). Predictions were based on ca. 150,000 soil profiles used for training and a stack of 158 remote sensing-based soil covariates (primarily derived from MODIS land products, SRTM DEM derivatives, climatic images and global landform and lithology maps), which were used to fit an ensemble of machine learning methods-random forest and gradient boosting and/or multinomial logistic regression-as implemented in the R packages ranger, xgboost, nnet and caret. The results of 10-fold cross-validation show that the ensemble models explain between 56% (coarse fragments) and 83% (pH) of variation with an overall average of 61%. Improvements in the relative accuracy considering the amount of variation explained, in comparison to the previous version of SoilGrids at 1 km spatial resolution, range from 60 to 230%. Improvements can be attributed to: (1) the use of machine learning instead of linear regression, (2) to considerable investments in preparing finer resolution covariate layers and (3) to insertion of additional soil profiles. Further development of SoilGrids could include refinement of methods to incorporate input uncertainties and derivation of posterior probability distributions (per pixel), and further automation of spatial modeling so that soil maps can be generated for potentially hundreds of soil variables. Another area of future research is the development of methods for multiscale merging of SoilGrids predictions with local and/or national gridded soil products (e.g. up to 50 m spatial resolution) so that increasingly more accurate, complete and consistent global soil information can be produced. SoilGrids are available under the Open Data Base License.
1
Future work includes incorporating input uncertainties and posterior probability distributions per pixel, automating spatial modeling, and multiscale merging with higher-resolution local/national products.
2
Models were trained on ~150,000 soil profiles and 158 remote-sensing-derived covariates using an ensemble of machine learning methods (random forest, gradient boosting, multinomial logistic regression).
3
Relative accuracy versus the previous 1 km SoilGrids improved by 60–230%, attributed to machine learning, finer-resolution covariates, and more soil profiles.
4
SoilGrids250m provides global predictions for multiple numeric soil properties and classes at seven standard depths and ~280 raster layers.
5
Ten-fold cross-validation shows ensemble models explain 56% (coarse fragments) to 83% (pH) of variation, with an overall average of 61%.

SoilGrids250m global gridded soil information system (250 m resolution soil predictions and maps)

Accuracy, technical development and predictive performance of machine-learning-based global soil property and class predictions (organic carbon, bulk density, CEC, pH, texture, coarse fragments, depth to bedrock, WRB and USDA classes) at seven depths using ensemble models and remote-sensing covariates

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Publication Date
2017-02-16
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Authors
Tomislav Hengl
Marvin N. Wright
G.B.M. Heuvelink
Rodrigo Vargas
N.H. Batjes
Bas Kempen
Eloi Ribeiro
J.G.B. Leenaars
Ichsani Wheeler
Milan Kilibarda
R.A. MacMillan
Jorge Mendes de Jesus
M. Ruiperez González
Aleksandar Blagotić
Wei Shangguan
Xiaoyuan Geng
Bernhard Bauer-Marschallinger
Mário Guevara
S. Mantel
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